No. words: 1066; after pruning: 1040


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:362)  344  0.28 0.00 0.28  BG263769Ld12P081D02P081D081F1_065.ab1        1   363 (183)  C BG263769Ld12P081D02P081D081R1_065.ab1   (158)   362     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C BG263769Ld12P081D02P081D081R1_065.ab1   520 
  226    BG263769Ld12P081D02P081D081F1_065.ab1    68 
  234  C BG263769Ld12P081D02P081D081R1_065.ab1   287 
  242    BG263769Ld12P081D02P081D081F1_065.ab1    84 
  246  C BG263769Ld12P081D02P081D081R1_065.ab1   275 
  254    BG263769Ld12P081D02P081D081F1_065.ab1    96 
  282  C BG263769Ld12P081D02P081D081R1_065.ab1   239 
  294    BG263769Ld12P081D02P081D081F1_065.ab1   136 
  302  C BG263769Ld12P081D02P081D081R1_065.ab1   219 
  306    BG263769Ld12P081D02P081D081F1_065.ab1   148 
  382  C BG263769Ld12P081D02P081D081R1_065.ab1   139 
  386    BG263769Ld12P081D02P081D081F1_065.ab1   228 
Contig length: old 703, new 704

Contig length: old 704, new 704
New start: 0