No. words: 703; after pruning: 677


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   29   -0.3 -0.3 (1,1:238)  159  7.62 0.00 0.00  BG263769Sn27P115H03P081D081F1_085.ab1        1   210 (141)  C BG263769Sn27P115H03P081D081R1_085.ab1   (113)   239    30 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.3       1        0

Gap   # merges  # failures
 size
29       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  64 nodes

 34 str. conn. components

Path
    1  C BG263769Sn27P115H03P081D081R1_085.ab1   352 
  184    BG263769Sn27P115H03P081D081F1_085.ab1    71 
  196  C BG263769Sn27P115H03P081D081R1_085.ab1   157 
  204    BG263769Sn27P115H03P081D081F1_085.ab1    91 
  208  C BG263769Sn27P115H03P081D081R1_085.ab1   145 
  235    BG263769Sn27P115H03P081D081F1_085.ab1   122 
  239  C BG263769Sn27P115H03P081D081R1_085.ab1   114 
  247    BG263769Sn27P115H03P081D081F1_085.ab1   134 
  251  C BG263769Sn27P115H03P081D081R1_085.ab1   102 
  317    BG263769Sn27P115H03P081D081F1_085.ab1   204 
Contig length: old 464, new 464

Contig length: old 464, new 464
New start: 0 
S Change at: 267; seg lengths: entry 1, contig 1