No. words: 728; after pruning: 702


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.1 -0.1 (1,1:264)  182  9.09 0.38 0.00  BG263769Sn31P115H03P081D081F1_083.ab1        1   264 (95)  C BG263769Sn31P115H03P081D081R1_083.ab1   (104)   265     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.1       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  66 nodes

 35 str. conn. components

Path
    1  C BG263769Sn31P115H03P081D081R1_083.ab1   369 
  144    BG263769Sn31P115H03P081D081F1_083.ab1    39 
  148  C BG263769Sn31P115H03P081D081R1_083.ab1   222 
  152    BG263769Sn31P115H03P081D081F1_083.ab1    47 
  160  C BG263769Sn31P115H03P081D081R1_083.ab1   210 
  192    BG263769Sn31P115H03P081D081F1_083.ab1    87 
  196  C BG263769Sn31P115H03P081D081R1_083.ab1   174 
  204    BG263769Sn31P115H03P081D081F1_083.ab1    99 
  208  C BG263769Sn31P115H03P081D081R1_083.ab1   162 
  245    BG263769Sn31P115H03P081D081F1_083.ab1   140 
  255  C BG263769Sn31P115H03P081D081R1_083.ab1   115 
  355    BG263769Sn31P115H03P081D081F1_083.ab1   250 
Contig length: old 463, new 464

Contig length: old 464, new 464
New start: 0 
S Change at: 117; seg lengths: entry 1, contig 1
S Change at: 267; seg lengths: entry 1, contig 1
S Change at: 275; seg lengths: entry 1, contig 1
S Change at: 337; seg lengths: entry 1, contig 1
S Change at: 363; seg lengths: entry 1, contig 1