No. words: 634; after pruning: 608


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -1.5 -1.5 (1,1:218)  135 11.11 0.00 0.46  BG263769Ta14P115H03P081D081F1_068.ab1        1   216 (99)  C BG263769Ta14P115H03P081D081R1_068.ab1   (101)   218     4 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.5       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  50 nodes

 27 str. conn. components

Path
    1  C BG263769Ta14P115H03P081D081R1_068.ab1   319 
  144    BG263769Ta14P115H03P081D081F1_068.ab1    43 
  148  C BG263769Ta14P115H03P081D081R1_068.ab1   172 
  156    BG263769Ta14P115H03P081D081F1_068.ab1    55 
  169  C BG263769Ta14P115H03P081D081R1_068.ab1   151 
  196    BG263769Ta14P115H03P081D081F1_068.ab1    95 
  206  C BG263769Ta14P115H03P081D081R1_068.ab1   114 
  307    BG263769Ta14P115H03P081D081F1_068.ab1   207 
Contig length: old 415, new 415

Contig length: old 415, new 415
New start: 0 
S Change at: 284; seg lengths: entry 1, contig 1
S Change at: 288; seg lengths: entry 1, contig 1
S Change at: 313; seg lengths: entry 1, contig 1