No. words: 661; after pruning: 635


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   14   -0.6 -0.6 (1,1:194)  140  7.18 0.00 0.00  BG263769Ta16P115H03P081D081F1_066.ab1        1   181 (142)  C BG263769Ta16P115H03P081D081R1_066.ab1   (143)   195    15 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.6       1        0

Gap   # merges  # failures
 size
14       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  60 nodes

 32 str. conn. components

Path
    1  C BG263769Ta16P115H03P081D081R1_066.ab1   338 
  171    BG263769Ta16P115H03P081D081F1_066.ab1    28 
  175  C BG263769Ta16P115H03P081D081R1_066.ab1   164 
  187    BG263769Ta16P115H03P081D081F1_066.ab1    44 
  199  C BG263769Ta16P115H03P081D081R1_066.ab1   140 
  207    BG263769Ta16P115H03P081D081F1_066.ab1    64 
  219  C BG263769Ta16P115H03P081D081R1_066.ab1   120 
  248    BG263769Ta16P115H03P081D081F1_066.ab1   105 
  252  C BG263769Ta16P115H03P081D081R1_066.ab1    87 
  318    BG263769Ta16P115H03P081D081F1_066.ab1   175 
Contig length: old 466, new 466

Contig length: old 466, new 466
New start: 0 
S Change at: 276; seg lengths: entry 2, contig 2