No. words: 637; after pruning: 611


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.3 -0.3 (1,1:237)  176  7.14 0.00 0.42  BG263769Ta17P115H03P081D081F1_095.ab1        1   238 (43)  C BG263769Ta17P115H03P081D081R1_095.ab1   (119)   237     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.3       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1  C BG263769Ta17P115H03P081D081R1_095.ab1   356 
  140    BG263769Ta17P115H03P081D081F1_095.ab1    21 
  144  C BG263769Ta17P115H03P081D081R1_095.ab1   213 
  196    BG263769Ta17P115H03P081D081F1_095.ab1    77 
  207  C BG263769Ta17P115H03P081D081R1_095.ab1   150 
  236    BG263769Ta17P115H03P081D081F1_095.ab1   117 
  268  C BG263769Ta17P115H03P081D081R1_095.ab1    89 
  322    BG263769Ta17P115H03P081D081F1_095.ab1   203 
  330  C BG263769Ta17P115H03P081D081R1_095.ab1    27 
  352    BG263769Ta17P115H03P081D081F1_095.ab1   234 
Contig length: old 399, new 399

Contig length: old 399, new 399
New start: 0 
S Change at: 124; seg lengths: entry 1, contig 1
S Change at: 252; seg lengths: entry 1, contig 1
S Change at: 260; seg lengths: entry 1, contig 1