No. words: 688; after pruning: 662


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    5   -0.6 -0.6 (1,1:273)  180  9.67 0.00 0.37  BG263769Ta23P115H03P081D081F1_089.ab1        1   269 (91)  C BG263769Ta23P115H03P081D081R1_089.ab1   (55)   273     6 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.6       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  72 nodes

 38 str. conn. components

Path
    1  C BG263769Ta23P115H03P081D081R1_089.ab1   328 
  144    BG263769Ta23P115H03P081D081F1_089.ab1    89 
  148  C BG263769Ta23P115H03P081D081R1_089.ab1   181 
  156    BG263769Ta23P115H03P081D081F1_089.ab1   101 
  169  C BG263769Ta23P115H03P081D081R1_089.ab1   160 
  200    BG263769Ta23P115H03P081D081F1_089.ab1   145 
  204  C BG263769Ta23P115H03P081D081R1_089.ab1   125 
  317    BG263769Ta23P115H03P081D081F1_089.ab1   263 
Contig length: old 414, new 414

Contig length: old 414, new 415
New start: 0 
S Change at: 68; seg lengths: entry 1, contig 1
S Change at: 288; seg lengths: entry 2, contig 2
I Change at: 317; seg lengths: entry 1, contig 0