No. words: 648; after pruning: 622


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -4.4 -4.4 (1,1:224)  116 12.78 0.00 1.76  BG263769Td04P115H03P081D081F1_078.ab1        1   227 (42)  C BG263769Td04P115H03P081D081R1_078.ab1   (156)   223     1 *
  Worst pair: offset 1 
LLR breakdown: discreps: -8.8 (<20 part: -8.8 (#=33), >20:0.0 (#=0); in HQ: -8.8, out HQ 0.0), match: 4.3  total: -4.5  116 12.78 0.00 1.76  BG263769Td04P115H03P081D081F1_078.ab1        1   227 (42)  C BG263769Td04P115H03P081D081R1_078.ab1   (156)   223     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.4       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  42 nodes

 23 str. conn. components

Path
    1  C BG263769Td04P115H03P081D081R1_078.ab1   379 
  181    BG263769Td04P115H03P081D081F1_078.ab1    26 
  185  C BG263769Td04P115H03P081D081R1_078.ab1   195 
  247    BG263769Td04P115H03P081D081F1_078.ab1    92 
  261  C BG263769Td04P115H03P081D081R1_078.ab1   119 
  265    BG263769Td04P115H03P081D081F1_078.ab1   110 
  283  C BG263769Td04P115H03P081D081R1_078.ab1    97 
  359    BG263769Td04P115H03P081D081F1_078.ab1   204 
Contig length: old 423, new 424

Contig length: old 424, new 424
New start: 0 
S Change at: 171; seg lengths: entry 1, contig 1
S Change at: 203; seg lengths: entry 1, contig 1
S Change at: 227; seg lengths: entry 1, contig 1
S Change at: 271; seg lengths: entry 9, contig 9