No. words: 625; after pruning: 599


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -4.1 -4.1 (1,1:208)  109 15.38 0.00 0.00  BG263769Td10P115H03P081D081F1_072.ab1        1   208 (62)  C BG263769Td10P115H03P081D081R1_072.ab1   (146)   209     2 *
  Worst pair: offset 0 
LLR breakdown: discreps: -7.2 (<20 part: -7.2 (#=32), >20:0.0 (#=0); in HQ: -7.2, out HQ 0.0), match: 3.9  trail: -0.9  total: -4.2  109 15.38 0.00 0.00  BG263769Td10P115H03P081D081F1_072.ab1        1   208 (62)  C BG263769Td10P115H03P081D081R1_072.ab1   (146)   209     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.1       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  38 nodes

 21 str. conn. components

Path
    1  C BG263769Td10P115H03P081D081R1_072.ab1   355 
  239    BG263769Td10P115H03P081D081F1_072.ab1    93 
  275  C BG263769Td10P115H03P081D081R1_072.ab1    81 
  343    BG263769Td10P115H03P081D081F1_072.ab1   197 
Contig length: old 416, new 416

Contig length: old 416, new 416
New start: 0 
S Change at: 163; seg lengths: entry 1, contig 1
S Change at: 195; seg lengths: entry 1, contig 1
S Change at: 217; seg lengths: entry 3, contig 3