No. words: 1106; after pruning: 1080


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.7 (1,1:513)  492  0.00 0.00 0.20  BG263780As01P081E02P081E081F1_054.ab1        5   511 (46)  C BG263780As01P081E02P081E081R1_054.ab1   (40)   509     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C BG263780As01P081E02P081E081R1_054.ab1   549 
   57    BG263780As01P081E02P081E081F1_054.ab1    21 
   73  C BG263780As01P081E02P081E081R1_054.ab1   477 
   77    BG263780As01P081E02P081E081F1_054.ab1    41 
   85  C BG263780As01P081E02P081E081R1_054.ab1   465 
  117    BG263780As01P081E02P081E081F1_054.ab1    81 
  121  C BG263780As01P081E02P081E081R1_054.ab1   429 
  141    BG263780As01P081E02P081E081F1_054.ab1   105 
  177  C BG263780As01P081E02P081E081R1_054.ab1   373 
  241    BG263780As01P081E02P081E081F1_054.ab1   205 
  445  C BG263780As01P081E02P081E081R1_054.ab1   105 
  453    BG263780As01P081E02P081E081F1_054.ab1   417 
  505  C BG263780As01P081E02P081E081R1_054.ab1    45 
  509    BG263780As01P081E02P081E081F1_054.ab1   473 
Contig length: old 592, new 593

Contig length: old 593, new 593
New start: 0