No. words: 1109; after pruning: 1083


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 5.3 (1,1:512)  486  0.20 0.20 0.00  BG263780As02P081E02P081E081F1_052.ab1        5   506 (51)  C BG263780As02P081E02P081E081R1_052.ab1   (42)   510     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C BG263780As02P081E02P081E081R1_052.ab1   552 
   82    BG263780As02P081E02P081E081F1_052.ab1    43 
   90  C BG263780As02P081E02P081E081R1_052.ab1   463 
  142    BG263780As02P081E02P081E081F1_052.ab1   103 
  150  C BG263780As02P081E02P081E081R1_052.ab1   403 
  162    BG263780As02P081E02P081E081F1_052.ab1   123 
  182  C BG263780As02P081E02P081E081R1_052.ab1   371 
  222    BG263780As02P081E02P081E081F1_052.ab1   183 
  470  C BG263780As02P081E02P081E081R1_052.ab1    83 
  474    BG263780As02P081E02P081E081F1_052.ab1   435 
Contig length: old 596, new 596

Contig length: old 596, new 596
New start: 0