No. words: 1092; after pruning: 1066


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 5.9 (1,1:493)  475  0.21 0.00 0.00  BG263780At02P081E02P081E081F1_079.ab1        1   487 (52)  C BG263780At02P081E02P081E081R1_079.ab1   (59)   494     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C BG263780At02P081E02P081E081R1_079.ab1   553 
   63    BG263780At02P081E02P081E081F1_079.ab1     4 
   75  C BG263780At02P081E02P081E081R1_079.ab1   479 
  142    BG263780At02P081E02P081E081F1_079.ab1    83 
  186  C BG263780At02P081E02P081E081R1_079.ab1   368 
  194    BG263780At02P081E02P081E081F1_079.ab1   135 
  210  C BG263780At02P081E02P081E081R1_079.ab1   344 
  222    BG263780At02P081E02P081E081F1_079.ab1   163 
  482  C BG263780At02P081E02P081E081R1_079.ab1    72 
  490    BG263780At02P081E02P081E081F1_079.ab1   431 
Contig length: old 598, new 598

Contig length: old 598, new 598
New start: 0