No. words: 1325; after pruning: 1299


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.6 (1,1:499)  479  0.00 0.00 0.40  BG263780Ld04P081E02P081E081F1_092.ab1        1   498 (148)  C BG263780Ld04P081E02P081E081R1_092.ab1   (180)   499     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C BG263780Ld04P081E02P081E081R1_092.ab1   679 
  540    BG263780Ld04P081E02P081E081F1_092.ab1   360 
  552  C BG263780Ld04P081E02P081E081R1_092.ab1   128 
  572    BG263780Ld04P081E02P081E081F1_092.ab1   392 
  580  C BG263780Ld04P081E02P081E081R1_092.ab1   100 
  604    BG263780Ld04P081E02P081E081F1_092.ab1   424 
  608  C BG263780Ld04P081E02P081E081R1_092.ab1    72 
  620    BG263780Ld04P081E02P081E081F1_092.ab1   440 
  636  C BG263780Ld04P081E02P081E081R1_092.ab1    44 
  640    BG263780Ld04P081E02P081E081F1_092.ab1   460 
Contig length: old 825, new 826

Contig length: old 826, new 826
New start: 0