No. words: 1378; after pruning: 1352


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:520)  508  0.00 0.19 0.00  BG274119Ld01P129E06P129F121F1_056.ab1        1   521 (176)  C BG274119Ld01P129E06P129F121R1_056.ab1   (159)   522     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1  C BG274119Ld01P129E06P129F121R1_056.ab1   681 
  253    BG274119Ld01P129E06P129F121F1_056.ab1    93 
  269  C BG274119Ld01P129E06P129F121R1_056.ab1   413 
  285    BG274119Ld01P129E06P129F121F1_056.ab1   125 
  349  C BG274119Ld01P129E06P129F121R1_056.ab1   333 
  369    BG274119Ld01P129E06P129F121F1_056.ab1   209 
  373  C BG274119Ld01P129E06P129F121R1_056.ab1   309 
  389    BG274119Ld01P129E06P129F121F1_056.ab1   229 
  493  C BG274119Ld01P129E06P129F121R1_056.ab1   189 
  533    BG274119Ld01P129E06P129F121F1_056.ab1   373 
  569  C BG274119Ld01P129E06P129F121R1_056.ab1   113 
  573    BG274119Ld01P129E06P129F121F1_056.ab1   413 
Contig length: old 857, new 857

Contig length: old 857, new 857
New start: 0