No. words: 1379; after pruning: 1353


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:521)  513  0.00 0.00 0.00  BG274119Ld02P129E06P129F121F1_054.ab1        1   522 (146)  C BG274119Ld02P129E06P129F121R1_054.ab1   (189)   522     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C BG274119Ld02P129E06P129F121R1_054.ab1   711 
  285    BG274119Ld02P129E06P129F121F1_054.ab1    96 
  297  C BG274119Ld02P129E06P129F121R1_054.ab1   415 
  309    BG274119Ld02P129E06P129F121F1_054.ab1   120 
  381  C BG274119Ld02P129E06P129F121R1_054.ab1   331 
  397    BG274119Ld02P129E06P129F121F1_054.ab1   208 
  413  C BG274119Ld02P129E06P129F121R1_054.ab1   299 
  417    BG274119Ld02P129E06P129F121F1_054.ab1   228 
  429  C BG274119Ld02P129E06P129F121R1_054.ab1   283 
  469    BG274119Ld02P129E06P129F121F1_054.ab1   280 
  525  C BG274119Ld02P129E06P129F121R1_054.ab1   187 
  537    BG274119Ld02P129E06P129F121F1_054.ab1   348 
  549  C BG274119Ld02P129E06P129F121R1_054.ab1   163 
  553    BG274119Ld02P129E06P129F121F1_054.ab1   364 
  597  C BG274119Ld02P129E06P129F121R1_054.ab1   115 
  609    BG274119Ld02P129E06P129F121F1_054.ab1   420 
Contig length: old 857, new 857

Contig length: old 857, new 857
New start: 0