No. words: 1387; after pruning: 1361


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.2 (1,1:534)  524  0.00 0.00 0.00  BG274119Ld09P129E06P129F121F1_071.ab1        2   535 (149)  C BG274119Ld09P129E06P129F121R1_071.ab1   (169)   534     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C BG274119Ld09P129E06P129F121R1_071.ab1   703 
  305    BG274119Ld09P129E06P129F121F1_071.ab1   137 
  317  C BG274119Ld09P129E06P129F121R1_071.ab1   387 
  333    BG274119Ld09P129E06P129F121F1_071.ab1   165 
  361  C BG274119Ld09P129E06P129F121R1_071.ab1   343 
  369    BG274119Ld09P129E06P129F121F1_071.ab1   201 
  377  C BG274119Ld09P129E06P129F121R1_071.ab1   327 
  509    BG274119Ld09P129E06P129F121F1_071.ab1   341 
  513  C BG274119Ld09P129E06P129F121R1_071.ab1   191 
  565    BG274119Ld09P129E06P129F121F1_071.ab1   397 
Contig length: old 852, new 852

Contig length: old 852, new 852
New start: 0