No. words: 1392; after pruning: 1366


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:532)  520  0.19 0.00 0.00  BG274119Ld10P129E06P129F121F1_069.ab1        1   533 (148)  C BG274119Ld10P129E06P129F121R1_069.ab1   (178)   533     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C BG274119Ld10P129E06P129F121R1_069.ab1   711 
  336    BG274119Ld10P129E06P129F121F1_069.ab1   158 
  384  C BG274119Ld10P129E06P129F121R1_069.ab1   328 
  396    BG274119Ld10P129E06P129F121F1_069.ab1   218 
  412  C BG274119Ld10P129E06P129F121R1_069.ab1   300 
  420    BG274119Ld10P129E06P129F121F1_069.ab1   242 
  452  C BG274119Ld10P129E06P129F121R1_069.ab1   260 
  468    BG274119Ld10P129E06P129F121F1_069.ab1   290 
  484  C BG274119Ld10P129E06P129F121R1_069.ab1   228 
  516    BG274119Ld10P129E06P129F121F1_069.ab1   338 
  524  C BG274119Ld10P129E06P129F121R1_069.ab1   188 
  564    BG274119Ld10P129E06P129F121F1_069.ab1   386 
Contig length: old 859, new 859

Contig length: old 859, new 859
New start: 0