No. words: 1394; after pruning: 1354


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.8 (1,1:658)  586  3.04 0.15 0.30  BG274485At02P027B04P027B101F1_094.ab1        1   658 (25)  C BG274485At02P027B04P027B101R1_094.ab1   (54)   657     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C BG274485At02P027B04P027B101R1_094.ab1   711 
   80    BG274485At02P027B04P027B101F1_094.ab1    26 
   84  C BG274485At02P027B04P027B101R1_094.ab1   628 
  137    BG274485At02P027B04P027B101F1_094.ab1    84 
  145  C BG274485At02P027B04P027B101R1_094.ab1   567 
  165    BG274485At02P027B04P027B101F1_094.ab1   112 
  169  C BG274485At02P027B04P027B101R1_094.ab1   543 
  177    BG274485At02P027B04P027B101F1_094.ab1   124 
  181  C BG274485At02P027B04P027B101R1_094.ab1   531 
  626    BG274485At02P027B04P027B101F1_094.ab1   574 
  667  C BG274485At02P027B04P027B101R1_094.ab1    45 
  691    BG274485At02P027B04P027B101F1_094.ab1   638 
  699  C BG274485At02P027B04P027B101R1_094.ab1    13 
  703    BG274485At02P027B04P027B101F1_094.ab1   650 
Contig length: old 735, new 736

Contig length: old 736, new 736
New start: 0