No. words: 1777; after pruning: 1737


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.9 (1,1:758)  753  0.00 0.00 0.13  BG274485Ld02P027B04P027B101F1_010.ab1        1   759 (97)  C BG274485Ld02P027B04P027B101R1_010.ab1   (163)   758     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C BG274485Ld02P027B04P027B101R1_010.ab1   921 
  171    BG274485Ld02P027B04P027B101F1_010.ab1     8 
  179  C BG274485Ld02P027B04P027B101R1_010.ab1   743 
  187    BG274485Ld02P027B04P027B101F1_010.ab1    24 
  195  C BG274485Ld02P027B04P027B101R1_010.ab1   727 
  199    BG274485Ld02P027B04P027B101F1_010.ab1    36 
  319  C BG274485Ld02P027B04P027B101R1_010.ab1   603 
  327    BG274485Ld02P027B04P027B101F1_010.ab1   164 
  735  C BG274485Ld02P027B04P027B101R1_010.ab1   187 
  759    BG274485Ld02P027B04P027B101F1_010.ab1   596 
  775  C BG274485Ld02P027B04P027B101R1_010.ab1   147 
  799    BG274485Ld02P027B04P027B101F1_010.ab1   636 
  835  C BG274485Ld02P027B04P027B101R1_010.ab1    87 
  907    BG274485Ld02P027B04P027B101F1_010.ab1   744 
Contig length: old 1018, new 1019

Contig length: old 1019, new 1019
New start: 0 
S Change at: 80; seg lengths: entry 1, contig 1