No. words: 914; after pruning: 888


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.2 -3.2 (1,1:522)   80  8.26 0.00 0.00  BG274485Ld04P027B04P027B101F1_006.ab1      415   523 (282)  C BG274485Ld04P027B04P027B101R1_006.ab1   (0)   109     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -5.5 (<20 part: -5.5 (#=9), >20:0.0 (#=0); in HQ: -5.5, out HQ 0.0), match: 2.2  total: -3.3   80  8.26 0.00 0.00  BG274485Ld04P027B04P027B101F1_006.ab1      415   523 (282)  C BG274485Ld04P027B04P027B101R1_006.ab1   (0)   109     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  36 nodes

 20 str. conn. components

Path
    1    BG274485Ld04P027B04P027B101F1_006.ab1     1 
Contig length: old 805, new 805

Contig length: old 805, new 805
New start: 0