No. words: 1816; after pruning: 1790


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.9 (1,1:758)  759  0.00 0.00 0.00  BG274485Ld08P027B04P027B101F1_029.ab1        1   759 (159)  C BG274485Ld08P027B04P027B101R1_029.ab1   (139)   759     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1  C BG274485Ld08P027B04P027B101R1_029.ab1   898 
  175    BG274485Ld08P027B04P027B101F1_029.ab1    36 
  187  C BG274485Ld08P027B04P027B101R1_029.ab1   712 
  191    BG274485Ld08P027B04P027B101F1_029.ab1    52 
  203  C BG274485Ld08P027B04P027B101R1_029.ab1   696 
  215    BG274485Ld08P027B04P027B101F1_029.ab1    76 
  319  C BG274485Ld08P027B04P027B101R1_029.ab1   580 
  587    BG274485Ld08P027B04P027B101F1_029.ab1   448 
  671  C BG274485Ld08P027B04P027B101R1_029.ab1   228 
  691    BG274485Ld08P027B04P027B101F1_029.ab1   552 
  707  C BG274485Ld08P027B04P027B101R1_029.ab1   192 
  731    BG274485Ld08P027B04P027B101F1_029.ab1   592 
  739  C BG274485Ld08P027B04P027B101R1_029.ab1   160 
  751    BG274485Ld08P027B04P027B101F1_029.ab1   612 
  767  C BG274485Ld08P027B04P027B101R1_029.ab1   132 
  803    BG274485Ld08P027B04P027B101F1_029.ab1   664 
  811  C BG274485Ld08P027B04P027B101R1_029.ab1    88 
  819    BG274485Ld08P027B04P027B101F1_029.ab1   680 
  823  C BG274485Ld08P027B04P027B101R1_029.ab1    76 
  891    BG274485Ld08P027B04P027B101F1_029.ab1   752 
Contig length: old 1057, new 1057

Contig length: old 1057, new 1057
New start: 0