No. words: 1824; after pruning: 1798


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.9 (1,1:757)  753  0.00 0.00 0.13  BG274485Ld09P027B04P027B101F1_027.ab1        1   758 (173)  C BG274485Ld09P027B04P027B101R1_027.ab1   (136)   757     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C BG274485Ld09P027B04P027B101R1_027.ab1   893 
  144    BG274485Ld09P027B04P027B101F1_027.ab1     8 
  152  C BG274485Ld09P027B04P027B101R1_027.ab1   742 
  156    BG274485Ld09P027B04P027B101F1_027.ab1    20 
  168  C BG274485Ld09P027B04P027B101R1_027.ab1   726 
  172    BG274485Ld09P027B04P027B101F1_027.ab1    36 
  200  C BG274485Ld09P027B04P027B101R1_027.ab1   694 
  212    BG274485Ld09P027B04P027B101F1_027.ab1    76 
  256  C BG274485Ld09P027B04P027B101R1_027.ab1   638 
  260    BG274485Ld09P027B04P027B101F1_027.ab1   124 
  328  C BG274485Ld09P027B04P027B101R1_027.ab1   566 
  340    BG274485Ld09P027B04P027B101F1_027.ab1   204 
  440  C BG274485Ld09P027B04P027B101R1_027.ab1   454 
  588    BG274485Ld09P027B04P027B101F1_027.ab1   452 
  792  C BG274485Ld09P027B04P027B101R1_027.ab1   102 
  800    BG274485Ld09P027B04P027B101F1_027.ab1   664 
  804  C BG274485Ld09P027B04P027B101R1_027.ab1    90 
  848    BG274485Ld09P027B04P027B101F1_027.ab1   712 
  852  C BG274485Ld09P027B04P027B101R1_027.ab1    42 
  880    BG274485Ld09P027B04P027B101F1_027.ab1   744 
Contig length: old 1066, new 1067

Contig length: old 1067, new 1067
New start: 0