No. words: 1001; after pruning: 961


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.2 (1,1:725)  223  0.43 0.00 0.00  BG274556As02P027C04P027C101F1_009.ab1        1   235 (0)  C BG274556As02P027C04P027C101R1_009.ab1   (40)   726   492 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  116 nodes

 60 str. conn. components

Path
    1  C BG274556As02P027C04P027C101R1_009.ab1   766 
   53    BG274556As02P027C04P027C101F1_009.ab1    13 
   65  C BG274556As02P027C04P027C101R1_009.ab1   702 
   69    BG274556As02P027C04P027C101F1_009.ab1    29 
  119  C BG274556As02P027C04P027C101R1_009.ab1   648 
  123    BG274556As02P027C04P027C101F1_009.ab1    83 
  143  C BG274556As02P027C04P027C101R1_009.ab1   624 
  155    BG274556As02P027C04P027C101F1_009.ab1   115 
  163  C BG274556As02P027C04P027C101R1_009.ab1   604 
  171    BG274556As02P027C04P027C101F1_009.ab1   131 
  175  C BG274556As02P027C04P027C101R1_009.ab1   592 
Contig length: old 766, new 766

Contig length: old 766, new 766
New start: 0