No. words: 1222; after pruning: 1196


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:623)  462  0.21 0.00 0.00  BG274556Ld03P027C04P027C101F1_016.ab1        1   476 (0)  C BG274556Ld03P027C04P027C101R1_016.ab1   (122)   624   149 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C BG274556Ld03P027C04P027C101R1_016.ab1   746 
  142    BG274556Ld03P027C04P027C101F1_016.ab1    20 
  170  C BG274556Ld03P027C04P027C101R1_016.ab1   577 
  174    BG274556Ld03P027C04P027C101F1_016.ab1    52 
  194  C BG274556Ld03P027C04P027C101R1_016.ab1   553 
  222    BG274556Ld03P027C04P027C101F1_016.ab1   100 
  230  C BG274556Ld03P027C04P027C101R1_016.ab1   517 
  246    BG274556Ld03P027C04P027C101F1_016.ab1   124 
  250  C BG274556Ld03P027C04P027C101R1_016.ab1   497 
  282    BG274556Ld03P027C04P027C101F1_016.ab1   160 
  286  C BG274556Ld03P027C04P027C101R1_016.ab1   461 
  298    BG274556Ld03P027C04P027C101F1_016.ab1   176 
  302  C BG274556Ld03P027C04P027C101R1_016.ab1   445 
  306    BG274556Ld03P027C04P027C101F1_016.ab1   184 
  310  C BG274556Ld03P027C04P027C101R1_016.ab1   437 
Contig length: old 746, new 746

Contig length: old 746, new 746
New start: 0