No. words: 1122; after pruning: 1096


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 2.3 (1,1:682)  269  2.30 0.00 0.33  BG274556Ld05P027C04P027C101F1_012.ab1        3   307 (0)  C BG274556Ld05P027C04P027C101R1_012.ab1   (135)   680   377 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  136 nodes

 70 str. conn. components

Path
    1  C BG274556Ld05P027C04P027C101R1_012.ab1   815 
  184    BG274556Ld05P027C04P027C101F1_012.ab1    51 
  192  C BG274556Ld05P027C04P027C101R1_012.ab1   624 
  200    BG274556Ld05P027C04P027C101F1_012.ab1    67 
  204  C BG274556Ld05P027C04P027C101R1_012.ab1   612 
Contig length: old 815, new 815

Contig length: old 815, new 815
New start: 0