No. words: 1131; after pruning: 1105


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 4.8 (1,1:680)  254  1.47 0.00 0.00  BG274556Ld07P027C04P027C101F1_008.ab1        3   274 (0)  C BG274556Ld07P027C04P027C101R1_008.ab1   (178)   679   408 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  130 nodes

 67 str. conn. components

Path
    1  C BG274556Ld07P027C04P027C101R1_008.ab1   857 
  227    BG274556Ld07P027C04P027C101F1_008.ab1    51 
  263  C BG274556Ld07P027C04P027C101R1_008.ab1   595 
  271    BG274556Ld07P027C04P027C101F1_008.ab1    95 
  279  C BG274556Ld07P027C04P027C101R1_008.ab1   579 
  283    BG274556Ld07P027C04P027C101F1_008.ab1   107 
  287  C BG274556Ld07P027C04P027C101R1_008.ab1   571 
Contig length: old 857, new 857

Contig length: old 857, new 857
New start: 0