No. words: 1165; after pruning: 1139


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.3 (1,1:530)  498  0.95 0.00 0.00  BG274556Ta12P052D11P027C101F1_070.ab1        3   531 (98)  C BG274556Ta12P052D11P027C101R1_070.ab1   (7)   529     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C BG274556Ta12P052D11P027C101R1_070.ab1   536 
   11    BG274556Ta12P052D11P027C101F1_070.ab1     6 
   51  C BG274556Ta12P052D11P027C101R1_070.ab1   486 
   55    BG274556Ta12P052D11P027C101F1_070.ab1    50 
  200  C BG274556Ta12P052D11P027C101R1_070.ab1   337 
  208    BG274556Ta12P052D11P027C101F1_070.ab1   203 
  232  C BG274556Ta12P052D11P027C101R1_070.ab1   305 
  236    BG274556Ta12P052D11P027C101F1_070.ab1   231 
  256  C BG274556Ta12P052D11P027C101R1_070.ab1   281 
  260    BG274556Ta12P052D11P027C101F1_070.ab1   255 
  264  C BG274556Ta12P052D11P027C101R1_070.ab1   273 
  268    BG274556Ta12P052D11P027C101F1_070.ab1   263 
  272  C BG274556Ta12P052D11P027C101R1_070.ab1   265 
  280    BG274556Ta12P052D11P027C101F1_070.ab1   275 
  300  C BG274556Ta12P052D11P027C101R1_070.ab1   237 
  304    BG274556Ta12P052D11P027C101F1_070.ab1   299 
  308  C BG274556Ta12P052D11P027C101R1_070.ab1   229 
  320    BG274556Ta12P052D11P027C101F1_070.ab1   315 
  336  C BG274556Ta12P052D11P027C101R1_070.ab1   201 
  340    BG274556Ta12P052D11P027C101F1_070.ab1   335 
  348  C BG274556Ta12P052D11P027C101R1_070.ab1   189 
  360    BG274556Ta12P052D11P027C101F1_070.ab1   355 
  398  C BG274556Ta12P052D11P027C101R1_070.ab1   139 
  402    BG274556Ta12P052D11P027C101F1_070.ab1   397 
  418  C BG274556Ta12P052D11P027C101R1_070.ab1   119 
  434    BG274556Ta12P052D11P027C101F1_070.ab1   429 
  438  C BG274556Ta12P052D11P027C101R1_070.ab1    99 
  462    BG274556Ta12P052D11P027C101F1_070.ab1   457 
  482  C BG274556Ta12P052D11P027C101R1_070.ab1    55 
  490    BG274556Ta12P052D11P027C101F1_070.ab1   485 
Contig length: old 634, new 634

Contig length: old 634, new 634
New start: 0 
S Change at: 42; seg lengths: entry 2, contig 2