No. words: 1795; after pruning: 1756


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.0 (1,1:595)  557  0.51 0.34 0.00  BG274556Ta18P052D11P027C101F1_096.ab1        1   594 (40)  C BG274556Ta18P052D11P027C101R1_034.ab1   (54)   597     2 *
Merge:(0)    0    0.0 9.7 (2,1:592)  470  1.37 0.00 0.20  BG274556Ta18P052D11P027C101R1_034.ab1        3   513 (138)    BG274556Ta18P052D11P027C101R1_096.ab1        1   510 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 1       1        0

Offset
  0       2 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  754 nodes

 280 str. conn. components

Path
    1  C BG274556Ta18P052D11P027C101F1_096.ab1   634 
   47    BG274556Ta18P052D11P027C101R1_034.ab1     8 
   83    BG274556Ta18P052D11P027C101R1_096.ab1    41 
   87  C BG274556Ta18P052D11P027C101F1_096.ab1   548 
  101    BG274556Ta18P052D11P027C101R1_034.ab1    62 
  111  C BG274556Ta18P052D11P027C101F1_096.ab1   524 
  115    BG274556Ta18P052D11P027C101R1_034.ab1    76 
  129  C BG274556Ta18P052D11P027C101F1_096.ab1   506 
  137    BG274556Ta18P052D11P027C101R1_034.ab1    98 
  163  C BG274556Ta18P052D11P027C101F1_096.ab1   472 
  165    BG274556Ta18P052D11P027C101R1_034.ab1   126 
  171  C BG274556Ta18P052D11P027C101F1_096.ab1   464 
  173    BG274556Ta18P052D11P027C101R1_034.ab1   134 
  187  C BG274556Ta18P052D11P027C101F1_096.ab1   448 
  189    BG274556Ta18P052D11P027C101R1_034.ab1   150 
  475  C BG274556Ta18P052D11P027C101F1_096.ab1   160 
  479    BG274556Ta18P052D11P027C101R1_034.ab1   440 
Contig length: old 689, new 690

Contig length: old 690, new 690
New start: 0