No. words: 1272; after pruning: 1246


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:592)  560  0.17 0.17 0.17  BG274556Ta23P052D11P027C101F1_089.ab1        1   593 (39)  C BG274556Ta23P052D11P027C101R1_089.ab1   (47)   593     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C BG274556Ta23P052D11P027C101R1_089.ab1   640 
   60    BG274556Ta23P052D11P027C101F1_089.ab1    12 
   72  C BG274556Ta23P052D11P027C101R1_089.ab1   569 
   76    BG274556Ta23P052D11P027C101F1_089.ab1    28 
  144  C BG274556Ta23P052D11P027C101R1_089.ab1   497 
  148    BG274556Ta23P052D11P027C101F1_089.ab1   100 
  228  C BG274556Ta23P052D11P027C101R1_089.ab1   413 
  232    BG274556Ta23P052D11P027C101F1_089.ab1   184 
  240  C BG274556Ta23P052D11P027C101R1_089.ab1   401 
  244    BG274556Ta23P052D11P027C101F1_089.ab1   196 
  280  C BG274556Ta23P052D11P027C101R1_089.ab1   361 
  284    BG274556Ta23P052D11P027C101F1_089.ab1   236 
  348  C BG274556Ta23P052D11P027C101R1_089.ab1   293 
  352    BG274556Ta23P052D11P027C101F1_089.ab1   304 
  360  C BG274556Ta23P052D11P027C101R1_089.ab1   281 
  376    BG274556Ta23P052D11P027C101F1_089.ab1   328 
  436  C BG274556Ta23P052D11P027C101R1_089.ab1   205 
  448    BG274556Ta23P052D11P027C101F1_089.ab1   400 
  452  C BG274556Ta23P052D11P027C101R1_089.ab1   189 
  456    BG274556Ta23P052D11P027C101F1_089.ab1   408 
  476  C BG274556Ta23P052D11P027C101R1_089.ab1   165 
  480    BG274556Ta23P052D11P027C101F1_089.ab1   432 
  488  C BG274556Ta23P052D11P027C101R1_089.ab1   153 
  512    BG274556Ta23P052D11P027C101F1_089.ab1   464 
  528  C BG274556Ta23P052D11P027C101R1_089.ab1   113 
  540    BG274556Ta23P052D11P027C101F1_089.ab1   492 
  560  C BG274556Ta23P052D11P027C101R1_089.ab1    81 
  564    BG274556Ta23P052D11P027C101F1_089.ab1   516 
  580  C BG274556Ta23P052D11P027C101R1_089.ab1    61 
  584    BG274556Ta23P052D11P027C101F1_089.ab1   536 
  598  C BG274556Ta23P052D11P027C101R1_089.ab1    43 
  606    BG274556Ta23P052D11P027C101F1_089.ab1   558 
  632  C BG274556Ta23P052D11P027C101R1_089.ab1    10 
  636    BG274556Ta23P052D11P027C101F1_089.ab1   588 
Contig length: old 679, new 680

Contig length: old 680, new 680
New start: 0