No. words: 1846; after pruning: 1794


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    5    0.0 5.6 (1,1:296)  272  0.00 0.34 0.34  BG313611Ld10P078F06P078F121F1_095.ab1        6   295 (142)  C BG313611Ld10P078F06P078F121R1_095.ab1   (180)   292     3 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.5 (1,1:300)  290  0.00 0.00 0.33  BG313611Ld10P078F06P078F121F1_015.ab1        1   301 (144)  C BG313611Ld10P078F06P078F121R1_015.ab1   (192)   300     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  140 nodes

 72 str. conn. components

Path
    1  C BG313611Ld10P078F06P078F121R1_095.ab1   472 
  355    BG313611Ld10P078F06P078F121F1_095.ab1   179 
Contig length: old 612, new 613

Contig 1:  150 nodes

 77 str. conn. components

Path
    1  C BG313611Ld10P078F06P078F121R1_015.ab1   492 
  378    BG313611Ld10P078F06P078F121F1_015.ab1   186 
  394  C BG313611Ld10P078F06P078F121R1_015.ab1    99 
  402    BG313611Ld10P078F06P078F121F1_015.ab1   210 
Contig length: old 636, new 637

Contig length: old 613, new 613
New start: 0 

Contig length: old 637, new 637
New start: 0