No. words: 1855; after pruning: 1803


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:286)  275  0.00 0.35 0.00  BG313611Ld11P078F06P078F121F1_013.ab1        1   287 (150)  C BG313611Ld11P078F06P078F121R1_013.ab1   (195)   288     1 *
Merge:(0)    0    0.0 5.2 (1,1:307)  293  0.00 0.00 0.65  BG313611Ld11P078F06P078F121F1_093.ab1        1   308 (145)  C BG313611Ld11P078F06P078F121R1_093.ab1   (175)   307     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  148 nodes

 76 str. conn. components

Path
    1  C BG313611Ld11P078F06P078F121R1_093.ab1   482 
  277    BG313611Ld11P078F06P078F121F1_093.ab1   102 
  285  C BG313611Ld11P078F06P078F121R1_093.ab1   198 
  345    BG313611Ld11P078F06P078F121F1_093.ab1   170 
  361  C BG313611Ld11P078F06P078F121R1_093.ab1   122 
  369    BG313611Ld11P078F06P078F121F1_093.ab1   194 
  385  C BG313611Ld11P078F06P078F121R1_093.ab1    98 
  405    BG313611Ld11P078F06P078F121F1_093.ab1   230 
Contig length: old 627, new 628

Contig 1:  142 nodes

 73 str. conn. components

Path
    1  C BG313611Ld11P078F06P078F121R1_013.ab1   483 
  387    BG313611Ld11P078F06P078F121F1_013.ab1   191 
  395  C BG313611Ld11P078F06P078F121R1_013.ab1    89 
  399    BG313611Ld11P078F06P078F121F1_013.ab1   203 
  431  C BG313611Ld11P078F06P078F121R1_013.ab1    53 
  435    BG313611Ld11P078F06P078F121F1_013.ab1   239 
Contig length: old 633, new 633

Contig length: old 628, new 628
New start: 0 

Contig length: old 633, new 633
New start: 0