No. words: 931; after pruning: 905


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.5 (1,1:293)  289  0.00 0.00 0.00  BG313611Ld13P078F06P078F121F1_089.ab1        1   294 (163)  C BG313611Ld13P078F06P078F121R1_089.ab1   (180)   294     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  148 nodes

 76 str. conn. components

Path
    1  C BG313611Ld13P078F06P078F121R1_089.ab1   474 
  379    BG313611Ld13P078F06P078F121F1_089.ab1   199 
  383  C BG313611Ld13P078F06P078F121R1_089.ab1    92 
  387    BG313611Ld13P078F06P078F121F1_089.ab1   207 
  399  C BG313611Ld13P078F06P078F121R1_089.ab1    76 
  407    BG313611Ld13P078F06P078F121F1_089.ab1   227 
Contig length: old 637, new 637

Contig length: old 637, new 637
New start: 0