No. words: 1178; after pruning: 1138


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:559)  548  0.18 0.18 0.00  BG313722Sn27P059E08P078H121F1_021.ab1        1   560 (34)  C BG313722Sn27P059E08P078H121R1_021.ab1   (23)   561     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C BG313722Sn27P059E08P078H121R1_021.ab1   584 
   37    BG313722Sn27P059E08P078H121F1_021.ab1    13 
   45  C BG313722Sn27P059E08P078H121R1_021.ab1   540 
   57    BG313722Sn27P059E08P078H121F1_021.ab1    33 
   69  C BG313722Sn27P059E08P078H121R1_021.ab1   516 
   77    BG313722Sn27P059E08P078H121F1_021.ab1    53 
   96  C BG313722Sn27P059E08P078H121R1_021.ab1   489 
  100    BG313722Sn27P059E08P078H121F1_021.ab1    76 
  112  C BG313722Sn27P059E08P078H121R1_021.ab1   473 
  128    BG313722Sn27P059E08P078H121F1_021.ab1   104 
  136  C BG313722Sn27P059E08P078H121R1_021.ab1   449 
  476    BG313722Sn27P059E08P078H121F1_021.ab1   452 
  488  C BG313722Sn27P059E08P078H121R1_021.ab1    97 
  496    BG313722Sn27P059E08P078H121F1_021.ab1   472 
  504  C BG313722Sn27P059E08P078H121R1_021.ab1    81 
  520    BG313722Sn27P059E08P078H121F1_021.ab1   496 
  524  C BG313722Sn27P059E08P078H121R1_021.ab1    61 
  532    BG313722Sn27P059E08P078H121F1_021.ab1   508 
  536  C BG313722Sn27P059E08P078H121R1_021.ab1    49 
  544    BG313722Sn27P059E08P078H121F1_021.ab1   520 
  548  C BG313722Sn27P059E08P078H121R1_021.ab1    37 
  556    BG313722Sn27P059E08P078H121F1_021.ab1   532 
Contig length: old 618, new 618

Contig length: old 618, new 618
New start: 0