No. words: 1177; after pruning: 1151


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:559)  538  0.36 0.18 0.18  BG313722Ta14P059E08P078H121F1_004.ab1        1   560 (35)  C BG313722Ta14P059E08P078H121R1_004.ab1   (22)   560     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C BG313722Ta14P059E08P078H121R1_004.ab1   582 
   56    BG313722Ta14P059E08P078H121F1_004.ab1    33 
   64  C BG313722Ta14P059E08P078H121R1_004.ab1   519 
   82    BG313722Ta14P059E08P078H121F1_004.ab1    59 
  110  C BG313722Ta14P059E08P078H121R1_004.ab1   473 
  126    BG313722Ta14P059E08P078H121F1_004.ab1   103 
  134  C BG313722Ta14P059E08P078H121R1_004.ab1   449 
  474    BG313722Ta14P059E08P078H121F1_004.ab1   451 
  502  C BG313722Ta14P059E08P078H121R1_004.ab1    81 
  514    BG313722Ta14P059E08P078H121F1_004.ab1   491 
  522  C BG313722Ta14P059E08P078H121R1_004.ab1    61 
  526    BG313722Ta14P059E08P078H121F1_004.ab1   503 
  546  C BG313722Ta14P059E08P078H121R1_004.ab1    37 
  550    BG313722Ta14P059E08P078H121F1_004.ab1   527 
Contig length: old 617, new 618

Contig length: old 618, new 618
New start: 0