No. words: 1191; after pruning: 1165


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:562)  552  0.00 0.18 0.00  BG313722Ta19P059E08P078H121F1_029.ab1        1   563 (35)  C BG313722Ta19P059E08P078H121R1_029.ab1   (29)   564     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C BG313722Ta19P059E08P078H121R1_029.ab1   593 
   63    BG313722Ta19P059E08P078H121F1_029.ab1    33 
  103  C BG313722Ta19P059E08P078H121R1_029.ab1   491 
  107    BG313722Ta19P059E08P078H121F1_029.ab1    77 
  119  C BG313722Ta19P059E08P078H121R1_029.ab1   475 
  131    BG313722Ta19P059E08P078H121F1_029.ab1   101 
  187  C BG313722Ta19P059E08P078H121R1_029.ab1   407 
  483    BG313722Ta19P059E08P078H121F1_029.ab1   453 
  507  C BG313722Ta19P059E08P078H121R1_029.ab1    87 
  535    BG313722Ta19P059E08P078H121F1_029.ab1   505 
  547  C BG313722Ta19P059E08P078H121R1_029.ab1    47 
  563    BG313722Ta19P059E08P078H121F1_029.ab1   533 
Contig length: old 628, new 628

Contig length: old 628, new 628
New start: 0