No. words: 1788; after pruning: 1736


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.6 (1,1:-550)  157  0.00 0.00 0.00  BG314283At01P081A03P081A091F1_093.ab1        1   165 (0)    BG314283At01P081A03P081A091F1_087.ab1      551   715 (117) *
Merge:(0)    2    0.0 2.3 (1,1:-29)  280  3.64 0.00 0.61  BG314283At01P081A03P081A091R1_093.ab1        1   330 (2)    BG314283At01P081A03P081A091R1_087.ab1       32   359 (100) *
Fail: (1)   98  -20.0 0.0 (2,2:350)  214  5.38 0.00 0.00  BG314283At01P081A03P081A091R1_093.ab1       73   332 (0)  C BG314283At01P081A03P081A091F1_087.ab1   (3)   829   570 *
  Bypassed reads: contig1: BG314283At01P081A03P081A091R1_087.ab1; contig2: none
  Worst pair: offset 0 
LLR breakdown: discreps: -20.3 (<20 part: -17.7 (#=16), >20:-2.6 (#=1); in HQ: -20.3, out HQ 0.0), match: 5.6  trail: -5.4  total: -20.1  211  6.32 0.00 0.00  BG314283At01P081A03P081A091R1_087.ab1       99   367 (92)  C BG314283At01P081A03P081A091F1_087.ab1   (0)   832   564 *
Fail: (1)   98  -20.0 -0.6 (2,2:350)  118  4.79 0.00 0.00  BG314283At01P081A03P081A091F1_093.ab1       20   165 (0)  C BG314283At01P081A03P081A091R1_093.ab1   (0)   332   187 *
  Bypassed reads: contig1: none; contig2: BG314283At01P081A03P081A091R1_087.ab1
  Worst pair: offset 0 
LLR breakdown: discreps: -20.3 (<20 part: -17.7 (#=16), >20:-2.6 (#=1); in HQ: -20.3, out HQ 0.0), match: 5.6  lead: -5.4  total: -20.1  211  6.32 0.00 0.00  BG314283At01P081A03P081A091F1_087.ab1      564   832 (0)  C BG314283At01P081A03P081A091R1_087.ab1   (92)   367    99 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0
-20.0       0        2

Gap   # merges  # failures
 size
 0       1        0
 2       1        0
98       0        2

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  122 nodes

 63 str. conn. components

Path
    1    BG314283At01P081A03P081A091R1_087.ab1     1 
Contig length: old 459, new 459

Contig 1:  84 nodes

 44 str. conn. components

Path
    1    BG314283At01P081A03P081A091F1_087.ab1     1 
  558    BG314283At01P081A03P081A091F1_093.ab1     8 
  590    BG314283At01P081A03P081A091F1_087.ab1   590 
  650    BG314283At01P081A03P081A091F1_093.ab1   100 
  654    BG314283At01P081A03P081A091F1_087.ab1   654 
  662    BG314283At01P081A03P081A091F1_093.ab1   112 
  666    BG314283At01P081A03P081A091F1_087.ab1   666 
Contig length: old 832, new 832

Contig length: old 459, new 459
New start: 0 
S Change at: 39; seg lengths: entry 1, contig 1

Contig length: old 832, new 832
New start: 0