No. words: 1158; after pruning: 1132


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:405)  393  0.25 0.00 0.49  BG314548Ld15P081B03P081B091F1_044.ab1        1   407 (189)  C BG314548Ld15P081B03P081B091R1_044.ab1   (157)   405     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1  C BG314548Ld15P081B03P081B091R1_044.ab1   562 
  173    BG314548Ld15P081B03P081B091F1_044.ab1    16 
  189  C BG314548Ld15P081B03P081B091R1_044.ab1   374 
  213    BG314548Ld15P081B03P081B091F1_044.ab1    56 
  249  C BG314548Ld15P081B03P081B091R1_044.ab1   314 
  265    BG314548Ld15P081B03P081B091F1_044.ab1   108 
Contig length: old 752, new 753

Contig length: old 753, new 753
New start: 0