No. words: 1153; after pruning: 1127


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.5 (1,1:410)  409  0.00 0.00 0.00  BG314548Ld18P081B03P081B091F1_038.ab1        1   410 (186)  C BG314548Ld18P081B03P081B091R1_038.ab1   (146)   411     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C BG314548Ld18P081B03P081B091R1_038.ab1   557 
  270    BG314548Ld18P081B03P081B091F1_038.ab1   124 
  282  C BG314548Ld18P081B03P081B091R1_038.ab1   276 
  290    BG314548Ld18P081B03P081B091F1_038.ab1   144 
  318  C BG314548Ld18P081B03P081B091R1_038.ab1   240 
  334    BG314548Ld18P081B03P081B091F1_038.ab1   188 
  338  C BG314548Ld18P081B03P081B091R1_038.ab1   220 
  378    BG314548Ld18P081B03P081B091F1_038.ab1   232 
  442  C BG314548Ld18P081B03P081B091R1_038.ab1   116 
  482    BG314548Ld18P081B03P081B091F1_038.ab1   336 
Contig length: old 742, new 742

Contig length: old 742, new 742
New start: 0