No. words: 1153; after pruning: 1127


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.2 (1,1:410)  378  1.71 0.24 0.24  BG314548Ld20P081B03P081B091F1_034.ab1        1   410 (157)  C BG314548Ld20P081B03P081B091R1_034.ab1   (175)   411     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  186 nodes

 95 str. conn. components

Path
    1  C BG314548Ld20P081B03P081B091R1_034.ab1   586 
  241    BG314548Ld20P081B03P081B091F1_034.ab1    65 
  245  C BG314548Ld20P081B03P081B091R1_034.ab1   342 
  284    BG314548Ld20P081B03P081B091F1_034.ab1   109 
  292  C BG314548Ld20P081B03P081B091R1_034.ab1   295 
  300    BG314548Ld20P081B03P081B091F1_034.ab1   125 
  304  C BG314548Ld20P081B03P081B091R1_034.ab1   283 
  324    BG314548Ld20P081B03P081B091F1_034.ab1   149 
  332  C BG314548Ld20P081B03P081B091R1_034.ab1   255 
  364    BG314548Ld20P081B03P081B091F1_034.ab1   189 
  376  C BG314548Ld20P081B03P081B091R1_034.ab1   211 
  380    BG314548Ld20P081B03P081B091F1_034.ab1   205 
  400  C BG314548Ld20P081B03P081B091R1_034.ab1   187 
  408    BG314548Ld20P081B03P081B091F1_034.ab1   233 
  424  C BG314548Ld20P081B03P081B091R1_034.ab1   163 
  428    BG314548Ld20P081B03P081B091F1_034.ab1   253 
  440  C BG314548Ld20P081B03P081B091R1_034.ab1   147 
  444    BG314548Ld20P081B03P081B091F1_034.ab1   269 
  472  C BG314548Ld20P081B03P081B091R1_034.ab1   115 
  476    BG314548Ld20P081B03P081B091F1_034.ab1   301 
  480  C BG314548Ld20P081B03P081B091R1_034.ab1   107 
  488    BG314548Ld20P081B03P081B091F1_034.ab1   313 
Contig length: old 742, new 742

Contig length: old 742, new 742
New start: 0