No. words: 1134; after pruning: 1108


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.0 (1,1:405)  393  0.49 0.25 0.00  BG314548Ld21P081B03P081B091F1_063.ab1        1   405 (173)  C BG314548Ld21P081B03P081B091R1_063.ab1   (149)   407     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C BG314548Ld21P081B03P081B091R1_063.ab1   556 
  422    BG314548Ld21P081B03P081B091F1_063.ab1   272 
  446  C BG314548Ld21P081B03P081B091R1_063.ab1   111 
  490    BG314548Ld21P081B03P081B091F1_063.ab1   340 
  514  C BG314548Ld21P081B03P081B091R1_063.ab1    43 
  518    BG314548Ld21P081B03P081B091F1_063.ab1   368 
Contig length: old 728, new 728

Contig length: old 728, new 728
New start: 0