No. words: 1137; after pruning: 1111


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.4 (1,1:410)  399  0.00 0.24 0.24  BG314548Ld23P081B03P081B091F1_059.ab1        1   410 (143)  C BG314548Ld23P081B03P081B091R1_059.ab1   (173)   411     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1  C BG314548Ld23P081B03P081B091R1_059.ab1   584 
  318    BG314548Ld23P081B03P081B091F1_059.ab1   145 
  322  C BG314548Ld23P081B03P081B091R1_059.ab1   263 
  382    BG314548Ld23P081B03P081B091F1_059.ab1   209 
  398  C BG314548Ld23P081B03P081B091R1_059.ab1   187 
  402    BG314548Ld23P081B03P081B091F1_059.ab1   229 
Contig length: old 726, new 726

Contig length: old 726, new 726
New start: 0