No. words: 1465; after pruning: 1397


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:689)  667  0.58 0.14 0.00  BG314551As01P081C03P081C091F1_088.ab1        1   690 (45)  C BG314551As01P081C03P081C091R1_088.ab1   (39)   691     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  334 nodes

 169 str. conn. components

Path
    1  C BG314551As01P081C03P081C091R1_088.ab1   730 
   44    BG314551As01P081C03P081C091F1_088.ab1     5 
   52  C BG314551As01P081C03P081C091R1_088.ab1   679 
   61    BG314551As01P081C03P081C091F1_088.ab1    21 
  316  C BG314551As01P081C03P081C091R1_088.ab1   415 
  336    BG314551As01P081C03P081C091F1_088.ab1   296 
  356  C BG314551As01P081C03P081C091R1_088.ab1   375 
  364    BG314551As01P081C03P081C091F1_088.ab1   324 
  376  C BG314551As01P081C03P081C091R1_088.ab1   355 
  384    BG314551As01P081C03P081C091F1_088.ab1   344 
  408  C BG314551As01P081C03P081C091R1_088.ab1   323 
  412    BG314551As01P081C03P081C091F1_088.ab1   372 
  424  C BG314551As01P081C03P081C091R1_088.ab1   307 
  472    BG314551As01P081C03P081C091F1_088.ab1   432 
  476  C BG314551As01P081C03P081C091R1_088.ab1   255 
  524    BG314551As01P081C03P081C091F1_088.ab1   484 
  532  C BG314551As01P081C03P081C091R1_088.ab1   199 
  715    BG314551As01P081C03P081C091F1_088.ab1   675 
  719  C BG314551As01P081C03P081C091R1_088.ab1    12 
  727    BG314551As01P081C03P081C091F1_088.ab1   687 
Contig length: old 775, new 775

Contig length: old 775, new 775
New start: 0