No. words: 1413; after pruning: 1373


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 13.0 (1,1:704)  661  0.15 0.15 0.00  BG314551At02P081C03P081C091F1_015.ab1        8   688 (0)  C BG314551At02P081C03P081C091R1_015.ab1   (26)   699    18 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C BG314551At02P081C03P081C091R1_015.ab1   725 
   34    BG314551At02P081C03P081C091F1_015.ab1    15 
   38  C BG314551At02P081C03P081C091R1_015.ab1   688 
   53    BG314551At02P081C03P081C091F1_015.ab1    33 
  260  C BG314551At02P081C03P081C091R1_015.ab1   466 
  280    BG314551At02P081C03P081C091F1_015.ab1   260 
  480  C BG314551At02P081C03P081C091R1_015.ab1   246 
Contig length: old 725, new 725

Contig length: old 725, new 725
New start: 0