No. words: 1442; after pruning: 1416


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:562)  546  0.00 0.00 0.00  BG314551Ld01P081C03P081C091F1_040.ab1        1   563 (151)  C BG314551Ld01P081C03P081C091R1_040.ab1   (165)   563     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C BG314551Ld01P081C03P081C091R1_040.ab1   728 
  603    BG314551Ld01P081C03P081C091F1_040.ab1   438 
Contig length: old 879, new 879

Contig length: old 879, new 879
New start: 0