No. words: 1447; after pruning: 1421


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:560)  540  0.00 0.18 0.00  BG314551Ld02P081C03P081C091F1_038.ab1        1   561 (155)  C BG314551Ld02P081C03P081C091R1_038.ab1   (169)   562     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C BG314551Ld02P081C03P081C091R1_038.ab1   731 
  615    BG314551Ld02P081C03P081C091F1_038.ab1   445 
  619  C BG314551Ld02P081C03P081C091R1_038.ab1   113 
  631    BG314551Ld02P081C03P081C091F1_038.ab1   461 
  643  C BG314551Ld02P081C03P081C091R1_038.ab1    89 
  663    BG314551Ld02P081C03P081C091F1_038.ab1   493 
  675  C BG314551Ld02P081C03P081C091R1_038.ab1    57 
  679    BG314551Ld02P081C03P081C091F1_038.ab1   509 
  703  C BG314551Ld02P081C03P081C091R1_038.ab1    29 
  707    BG314551Ld02P081C03P081C091F1_038.ab1   537 
Contig length: old 886, new 886

Contig length: old 886, new 886
New start: 0