No. words: 1454; after pruning: 1428


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 10.2 (1,1:571)  536  0.35 0.18 0.00  BG314551Ld03P081C03P081C091F1_036.ab1        9   572 (152)  C BG314551Ld03P081C03P081C091R1_036.ab1   (165)   565     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C BG314551Ld03P081C03P081C091R1_036.ab1   730 
  468    BG314551Ld03P081C03P081C091F1_036.ab1   310 
  540  C BG314551Ld03P081C03P081C091R1_036.ab1   191 
  576    BG314551Ld03P081C03P081C091F1_036.ab1   418 
  584  C BG314551Ld03P081C03P081C091R1_036.ab1   147 
  612    BG314551Ld03P081C03P081C091F1_036.ab1   454 
  620  C BG314551Ld03P081C03P081C091R1_036.ab1   111 
  636    BG314551Ld03P081C03P081C091F1_036.ab1   478 
  652  C BG314551Ld03P081C03P081C091R1_036.ab1    79 
  660    BG314551Ld03P081C03P081C091F1_036.ab1   502 
Contig length: old 882, new 882

Contig length: old 882, new 882
New start: 0