No. words: 1452; after pruning: 1426


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:567)  552  0.00 0.00 0.00  BG314551Ld06P081C03P081C091F1_061.ab1        1   568 (171)  C BG314551Ld06P081C03P081C091R1_061.ab1   (145)   568     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C BG314551Ld06P081C03P081C091R1_061.ab1   713 
  198    BG314551Ld06P081C03P081C091F1_061.ab1    53 
  202  C BG314551Ld06P081C03P081C091R1_061.ab1   512 
  218    BG314551Ld06P081C03P081C091F1_061.ab1    73 
  222  C BG314551Ld06P081C03P081C091R1_061.ab1   492 
  230    BG314551Ld06P081C03P081C091F1_061.ab1    85 
  234  C BG314551Ld06P081C03P081C091R1_061.ab1   480 
  306    BG314551Ld06P081C03P081C091F1_061.ab1   161 
  450  C BG314551Ld06P081C03P081C091R1_061.ab1   264 
  474    BG314551Ld06P081C03P081C091F1_061.ab1   329 
  498  C BG314551Ld06P081C03P081C091R1_061.ab1   216 
  526    BG314551Ld06P081C03P081C091F1_061.ab1   381 
  530  C BG314551Ld06P081C03P081C091R1_061.ab1   184 
  538    BG314551Ld06P081C03P081C091F1_061.ab1   393 
  554  C BG314551Ld06P081C03P081C091R1_061.ab1   160 
  562    BG314551Ld06P081C03P081C091F1_061.ab1   417 
  578  C BG314551Ld06P081C03P081C091R1_061.ab1   136 
  582    BG314551Ld06P081C03P081C091F1_061.ab1   437 
Contig length: old 884, new 884

Contig length: old 884, new 884
New start: 0