No. words: 1448; after pruning: 1422


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:562)  548  0.00 0.00 0.00  BG314551Ld07P081C03P081C091F1_059.ab1        1   563 (152)  C BG314551Ld07P081C03P081C091R1_059.ab1   (170)   563     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C BG314551Ld07P081C03P081C091R1_059.ab1   733 
  421    BG314551Ld07P081C03P081C091F1_059.ab1   251 
  429  C BG314551Ld07P081C03P081C091R1_059.ab1   305 
  437    BG314551Ld07P081C03P081C091F1_059.ab1   267 
  453  C BG314551Ld07P081C03P081C091R1_059.ab1   281 
  497    BG314551Ld07P081C03P081C091F1_059.ab1   327 
  517  C BG314551Ld07P081C03P081C091R1_059.ab1   217 
  533    BG314551Ld07P081C03P081C091F1_059.ab1   363 
  549  C BG314551Ld07P081C03P081C091R1_059.ab1   185 
  569    BG314551Ld07P081C03P081C091F1_059.ab1   399 
  581  C BG314551Ld07P081C03P081C091R1_059.ab1   153 
  601    BG314551Ld07P081C03P081C091F1_059.ab1   431 
  613  C BG314551Ld07P081C03P081C091R1_059.ab1   121 
  617    BG314551Ld07P081C03P081C091F1_059.ab1   447 
Contig length: old 885, new 885

Contig length: old 885, new 885
New start: 0