No. words: 1730; after pruning: 1704


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 14.0 (1,1:713)  679  0.56 0.00 0.00  BG314551Ld09P081C03P081C091F1_047.ab1        6   714 (141)  C BG314551Ld09P081C03P081C091R1_047.ab1   (166)   709     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C BG314551Ld09P081C03P081C091R1_047.ab1   875 
  202    BG314551Ld09P081C03P081C091F1_047.ab1    41 
  206  C BG314551Ld09P081C03P081C091R1_047.ab1   670 
  470    BG314551Ld09P081C03P081C091F1_047.ab1   309 
  486  C BG314551Ld09P081C03P081C091R1_047.ab1   390 
  494    BG314551Ld09P081C03P081C091F1_047.ab1   333 
  610  C BG314551Ld09P081C03P081C091R1_047.ab1   266 
  618    BG314551Ld09P081C03P081C091F1_047.ab1   457 
  730  C BG314551Ld09P081C03P081C091R1_047.ab1   146 
  742    BG314551Ld09P081C03P081C091F1_047.ab1   581 
  754  C BG314551Ld09P081C03P081C091R1_047.ab1   122 
  762    BG314551Ld09P081C03P081C091F1_047.ab1   601 
Contig length: old 1016, new 1016

Contig length: old 1016, new 1016
New start: 0