No. words: 1453; after pruning: 1427


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 11.1 (1,1:572)  550  0.00 0.00 0.00  BG314551Ld11P081C03P081C091F1_043.ab1        8   573 (148)  C BG314551Ld11P081C03P081C091R1_043.ab1   (166)   566     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C BG314551Ld11P081C03P081C091R1_043.ab1   732 
  550    BG314551Ld11P081C03P081C091F1_043.ab1   391 
  558  C BG314551Ld11P081C03P081C091R1_043.ab1   175 
  562    BG314551Ld11P081C03P081C091F1_043.ab1   403 
  586  C BG314551Ld11P081C03P081C091R1_043.ab1   147 
  614    BG314551Ld11P081C03P081C091F1_043.ab1   455 
  622  C BG314551Ld11P081C03P081C091R1_043.ab1   111 
  634    BG314551Ld11P081C03P081C091F1_043.ab1   475 
Contig length: old 880, new 880

Contig length: old 880, new 880
New start: 0